MmuEX6100698 @ mm9
Exon Skipping
Gene
ENSMUSG00000038765 | Lmx1b
Description
LIM homeobox transcription factor 1 beta [Source:MGI Symbol;Acc:MGI:1100513]
Coordinates
chr2:33420602-33422482:-
Coord C1 exon
chr2:33422405-33422482
Coord A exon
chr2:33422191-33422257
Coord C2 exon
chr2:33420602-33420745
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCTGGACTGTTCCTCTACAGATG
3' ss Score
9.27
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCCGAGAGACATTGGCAGCAGAGACAGGCCTCAGCGTGCGTGTGGTCCAGGTCTGGTTTCAGAACCAAAGAGCAAAG
Seq A exon
ATGAAGAAGCTGGCCCGGAGACACCAGCAACAGCAGGAGCAGCAGAACTCCCAGCGGCTGGGCCAAG
Seq C2 exon
AGGTTCTGTCAAGCCGCATGGAGGGCATGATGGCCTCCTACACGCCGCTGGCCCCTCCGCAGCAGCAGATCGTGGCCATGGAGCAGAGCCCCTACGGAAGTAGCGACCCCTTCCAACAGGGCCTCACGCCGCCCCAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038765-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=1.000 C2=0.959
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(43.9=100)
A:
PF0004624=Homeobox=PD(3.5=8.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATTGGCAGCAGAGACAGG
R:
GAAGGGGTCGCTACTTCCGTA
Band lengths:
183-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: