RnoEX6016521 @ rn6
Exon Skipping
Gene
ENSRNOG00000017019 | Lmx1b
Description
LIM homeobox transcription factor 1 beta [Source:RGD Symbol;Acc:620843]
Coordinates
chr3:12610029-12612009:-
Coord C1 exon
chr3:12611932-12612009
Coord A exon
chr3:12611722-12611788
Coord C2 exon
chr3:12610029-12610172
Length
67 bp
Sequences
Splice sites
3' ss Seq
CCTGGACTGTCCCTCTGCAGATG
3' ss Score
10.56
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCCGAGAGACACTAGCCGCAGAGACAGGCCTCAGTGTGCGTGTGGTCCAGGTCTGGTTTCAGAACCAAAGAGCAAAG
Seq A exon
ATGAAGAAGCTGGCCCGGAGGCACCAGCAACAGCAAGAGCAGCAGAACTCCCAGCGGCTGGGCCAAG
Seq C2 exon
AGGTTCTGTCAAGCCGCATGGAGGGCATGATGGCCTCCTACACGCCGCTGGCCCCTCCGCAGCAGCAGATCGTGGCCATGGAGCAGAGCCCCTACGGAAGCAGCGACCCCTTCCAGCAGGGCCTCACGCCGCCCCAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017019-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=1.000 C2=0.959
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(43.9=100)
A:
PF0004624=Homeobox=PD(3.5=8.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGACACTAGCCGCAGAGA
R:
GGGTCGCTGCTTCCGTAG
Band lengths:
183-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]