GgaEX6043696 @ galGal3
Exon Skipping
Gene
ENSGALG00000003424 | E1C2D6_CHICK
Description
NA
Coordinates
chr8:5384650-5385154:+
Coord C1 exon
chr8:5384650-5384727
Coord A exon
chr8:5384806-5384875
Coord C2 exon
chr8:5384987-5385154
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTTCTTTTCACCCAGATG
3' ss Score
9.92
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGCGGGAGACACTGGCAGCCGAGACAGGGCTGAGCGTGCGCGTGGTGCAGGTCTGGTTCCAGAACCAGAGAGCAAAG
Seq A exon
ATGAAGAAGCTGGCCAGGAGGCAGCAGCAGCAGCAGCAGGACCAGCAGAACACGCAGCGCTTGAGCTCAG
Seq C2 exon
CCCAGCCGAACAGCAGTGGCCCTGGGGGGCTGGAGGGGCTTATGAACCCCTACACTGCTCTGCAACCCCCACAGCAGCTCCTGGGCATGGAGCAGGTCTACAGCTCCGACCCCTTCCGGCAAGGGCTCACCCCCCCACAGATGCCTGGAGACCACATGCACCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003424-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=1.000 C2=0.982
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(43.9=100)
A:
PF0004624=Homeobox=PD(3.5=8.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAGAACCAGAGAGCAAAG
R:
ATGTGGTCTCCAGGCATCTGT
Band lengths:
179-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]