RnoEX6045265 @ rn6
Exon Skipping
Gene
ENSRNOG00000004642 | Lmx1a
Description
LIM homeobox transcription factor 1 alpha [Source:RGD Symbol;Acc:1304784]
Coordinates
chr13:86052375-86057387:+
Coord C1 exon
chr13:86052375-86052452
Coord A exon
chr13:86053981-86054050
Coord C2 exon
chr13:86057217-86057387
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGTGGTCCTCTCCTCATCAGATG
3' ss Score
8.71
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTGAGGGAGACTCTGGCTGCGGAGACAGGGCTGAGTGTCCGTGTGGTTCAGGTGTGGTTCCAGAACCAGCGAGCCAAG
Seq A exon
ATGAAGAAGCTGGCCCGGCGACAGCAGCAACAGCAACAGGATCAACAGAACACCCAGAGGCTGAGTTCTG
Seq C2 exon
CTCAGACAAATGGTAGTGGCAATGCTGGCATGGAAGGCATCATGAACCCCTATACAACGTTGCCCACCCCACAGCAACTGCTGGCCATTGAACAGAGCGTCTACAACTCTGATCCCTTCCGACAGGGTCTCACCCCACCCCAGATGCCTGGAGATCACATGCACCCCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004642-'10-6,'10-4,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=1.000 C2=0.793
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(43.9=100)
A:
PF0004624=Homeobox=PD(3.5=8.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTGTCCGTGTGGTTCAG
R:
CCTGTCGGAAGGGATCAGAGT
Band lengths:
174-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]