MmuEX6029020 @ mm10
Exon Skipping
Gene
ENSMUSG00000026686 | Lmx1a
Description
LIM homeobox transcription factor 1 alpha [Source:MGI Symbol;Acc:MGI:1888519]
Coordinates
chr1:167833830-167844802:+
Coord C1 exon
chr1:167833830-167834251
Coord A exon
chr1:167840903-167840972
Coord C2 exon
chr1:167844632-167844802
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGTGATCTTCTCTTTGTCAGATG
3' ss Score
9.01
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
TATCTCACTGTAGTGGCTATTCCTGGTTGTCAACTTGACAATATTTGGAATGAACTACAATTCGGAATTGGAAGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATCCTTATCTGGATCTTGGTTTGAAGATCTTGAGCCATAGTGGCTATGGATTCCAGAAGATTGAATCTCCGAGTTTAAGGAACACACCTTTAATCTGGGCTACTCCTTTCATCTGGGATTAAAGGTGTGGTGGAACACACCTTAATCTGGGCTACACCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTCCTGCTCCTTCGCCTGCTTGCTGCGTGAGACTGAGTAACTGCTAGATCCTTGGACTTCCATTCACAGCTGTGACTGAACGATTGTTGGGAATTGAGCTGCCGACT
Seq A exon
ATGAAGAAGCTGGCCCGGCGACAGCAGCAACAGCAACAGGACCAACAGAACACCCAGAGGCTGACTTCTG
Seq C2 exon
CTCAGACAAATGGTAGTGGGAATGCGGGCATGGAAGGGATCATGAACCCCTATACAACGTTGCCCACCCCACAGCAGCTGCTGGCCATTGAACAGAGCGTCTACAACTCTGATCCCTTCCGACAGGGTCTCACCCCACCCCAGATGCCTGGAGATCACATGCACCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026686-'23-16,'23-15,24-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.793
Domain overlap (PFAM):
C1:
NA
A:
PF0004624=Homeobox=PD(3.5=8.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTTCCATTCACAGCTGTG
R:
CCTGTCGGAAGGGATCAGAGT
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types