BtaEX6013735 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012025 | LMX1A
Description
Bos taurus LIM homeobox transcription factor 1, alpha (LMX1A), mRNA. [Source:RefSeq mRNA;Acc:NM_001191325]
Coordinates
chr3:3859102-3863349:+
Coord C1 exon
chr3:3859102-3859179
Coord A exon
chr3:3860965-3861034
Coord C2 exon
chr3:3863179-3863349
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTGAGTTCTCTCCTCCCCAGATG
3' ss Score
9.95
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
GTGAGGGAGACCCTGGCTGCAGAGACAGGGCTGAGCGTCCGTGTGGTTCAGGTGTGGTTCCAGAACCAGAGAGCTAAG
Seq A exon
ATGAAGAAGCTGGCCCGGCGGCAGCAGCAGCAGCAGCAAGATCAGCAGAACACCCAGAGGCTGAGTTCCG
Seq C2 exon
CTCAGACAAACGGTGGTGGGAGCGCTGGCATGGAAGGGATCATGAACCCCTACACGGCTCTGCCCACCTCACAGCAGCTCCTGGCCATCGAACAGAGTGTCTACAGCTCAGATCCCTTCCGACAGGGGCTCACCCCACCCCAGATGCCTGGAGACCACATGCACCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012025-'5-9,'5-7,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=1.000 C2=0.629
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(43.9=100)
A:
PF0004624=Homeobox=PD(3.5=8.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGTGTGGTTCAGGTGTG
R:
CTGTCGGAAGGGATCTGAGCT
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]