GgaEX6043696 @ galGal4
Exon Skipping
Gene
ENSGALG00000003424 | LMX1A
Description
LIM homeobox transcription factor 1-alpha [Source:RefSeq peptide;Acc:NP_001244317]
Coordinates
chr8:5163547-5164051:+
Coord C1 exon
chr8:5163547-5163624
Coord A exon
chr8:5163703-5163772
Coord C2 exon
chr8:5163884-5164051
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTTCTTTTCACCCAGATG
3' ss Score
9.92
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGCGGGAGACACTGGCAGCCGAGACAGGGCTGAGCGTGCGCGTGGTGCAGGTCTGGTTCCAGAACCAGAGAGCAAAG
Seq A exon
ATGAAGAAGCTGGCCAGGAGGCAGCAGCAGCAGCAGCAGGACCAGCAGAACACGCAGCGCTTGAGCTCAG
Seq C2 exon
CCCAGCCGAACAGCAGTGGCCCTGGGGGGCTGGAGGGGCTTATGAACCCCTACACTGCTCTGCAACCCCCACAGCAGCTCCTGGGCATGGAGCAGGTCTACAGCTCCGACCCCTTCCGGCAAGGGCTCACCCCCCCACAGATGCCTGGAGACCACATGCACCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003424-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=1.000 C2=0.982
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(43.9=100)
A:
PF0004624=Homeobox=PD(3.5=8.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAGAACCAGAGAGCAAAG
R:
ATGTGGTCTCCAGGCATCTGT
Band lengths:
179-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]