GgaEX0001451 @ galGal3
Exon Skipping
Gene
ENSGALG00000001291 | CLIP2
Description
NA
Coordinates
chr19:2757758-2762044:-
Coord C1 exon
chr19:2761920-2762044
Coord A exon
chr19:2758884-2759097
Coord C2 exon
chr19:2757758-2757955
Length
214 bp
Sequences
Splice sites
3' ss Seq
GTGCATCCCCCCTGTTGCAGGTA
3' ss Score
9.79
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTCGGTGGGACGAAGACGGGAGTTGTGCGCTACGTGGGAGAGACAGACTTTGCCAAAGGAGAGTGGTGTGGCGTGGAGCTGGATGAGCCCCTGGGGAAGAACGATGGGGCTGTGGCTGGAACAAG
Seq A exon
GTATTTTCAGTGCCCTCCCAAGTTTGGCCTCTTTGCTCCCATCCACAAGGTGATTCGGATTGGGTTTCCATCAACCAGCCCTGCCAAGGCGAAGAAGAGCAAGCGGATGGCCATGGGAGTGTCTGCCCTCACCCACAGCCCCAGCAGCTCTTCCATCAGCTCCGTCAGCTCCGTGGCTTCCTCTGTTGGGGGCAGACCTAGCCGCAGTGGGCTG
Seq C2 exon
CTGACAGAGACCTCCTCTCGTTACGCCCGTAAGATCTCTGGCACCACGGCTCTCCAGGAGGCTCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCAGAGCGTGACCTGGAGCGGGCCGAGGTGGCCAAGGCCACCAGCCACATCTGTGAGGTGGAGAAGGAGATCGCCATCATGAAGGCCCAACATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001291_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.403 C2=0.136
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=FE(62.1=100)
A:
PF0130220=CAP_GLY=PD(27.3=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGTGGGAGAGACAGACT
R:
CTGCTCATGTTGGGCCTTCAT
Band lengths:
295-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]