RnoEX6064064 @ rn6
Exon Skipping
Gene
ENSRNOG00000021611 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:RGD Symbol;Acc:62019]
Coordinates
chr12:25207283-25209050:+
Coord C1 exon
chr12:25207283-25207407
Coord A exon
chr12:25208149-25208362
Coord C2 exon
chr12:25208853-25209050
Length
214 bp
Sequences
Splice sites
3' ss Seq
GGCTCTAATTTGCTCCCCAGGTA
3' ss Score
8.19
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GTTGGTGGGACGAAGACCGGTGTGGTACGATATGTTGGGGAGACGGACTTTGCCAAAGGCGAGTGGTGTGGTGTGGAGCTGGACGAGCCCCTTGGGAAGAACGATGGGGCAGTGGCAGGCACCAG
Seq A exon
GTACTTCCAGTGCCCACCCAAGTTCGGTCTCTTTGCACCAATCCACAAGGTCATCCGAATTGGCTTCCCATCTACCAGTCCAGCCAAGGCCAAGAAGACCAAGCGCATGGCTATGGGTGTCTCAGCCTTGACCCACAGCCCCAGCAGTTCTTCCATCAGCTCTGTCAGCTCTGTGGCCTCCTCTGTTGGTGGCCGGCCGAGCCGTAGTGGCCTG
Seq C2 exon
CTCACAGAGACCTCTTCACGCTATGCCCGGAAGATCTCAGGCACCACAGCCCTGCAGGAGGCACTGAAGGAGAAACAGCAGCACATCGAACAGCTGCTGGCTGAGCGTGACTTGGAGAGGGCAGAAGTAGCCAAGGCTACCAGTCATATCTGTGAGGTGGAGAAGGAAATTGCCCTGCTGAAGGCACAGCATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021611-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.403 C2=0.106
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=FE(62.1=100)
A:
PF0130220=CAP_GLY=PD(27.3=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGTGGTACGATATGTTGGG
R:
CCTTCAGCAGGGCAATTTCCT
Band lengths:
292-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]