BtaEX6110181 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011875 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:HGNC:2586]
Coordinates
chr25:33595061-33598062:-
Coord C1 exon
chr25:33597938-33598062
Coord A exon
chr25:33596288-33596501
Coord C2 exon
chr25:33595061-33595258
Length
214 bp
Sequences
Splice sites
3' ss Seq
GGTCTCTCCTGCCCCTCCAGGTA
3' ss Score
9.93
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GTTGGTGGGACGAAGACTGGCGTGGTGCGGTATGTGGGGGAGACAGACTTTGCCAAGGGCGAGTGGTGTGGCGTGGAACTGGACGAGCCCCTTGGGAAGAACGATGGGGCGGTGGCGGGCACCAG
Seq A exon
GTACTTCCAGTGCCCACCCAAGTTTGGTCTCTTTGCACCCATCCACAAGGTGATCCGCATCGGCTTCCCATCCACCAGCCCAGCCAAGGCCAAGAAGACCAAGCGTATGGCCATGGGTGTGTCGGCGCTGACCCACAGTCCCAGCAGCTCCTCCATCAGCTCTGTCAGCTCTGTGGCCTCCTCCGTGGGTGGCCGGCCCAGCCGCAGTGGCCTG
Seq C2 exon
CTCACCGAGACCTCCTCGCGCTACGCCCGCAAGATCTCAGGCACCACGGCCTTGCAGGAGGCGCTGAAGGAGAAGCAGCAGCACATAGAGCAGCTGCTGGCTGAACGGGACCTGGAGCGGGCTGAGGTGGCCAAGGCCACGAGCCACATCTGCGAGGTGGAGAAGGAGATCGCCCTGCTCAAGGCACAGCACGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011875-'2-7,'2-6,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.403 C2=0.106
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=FE(62.1=100)
A:
PF0130220=CAP_GLY=PD(27.3=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGGGACGAAGACTGG
R:
GATCTCCTTCTCCACCTCGCA
Band lengths:
296-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]