DreEX0022126 @ danRer10
Exon Skipping
Gene
ENSDARG00000059596 | clip2
Description
CAP-GLY domain containing linker protein 2 [Source:ZFIN;Acc:ZDB-GENE-100727-3]
Coordinates
chr5:58766765-58780154:+
Coord C1 exon
chr5:58766765-58766889
Coord A exon
chr5:58774793-58775006
Coord C2 exon
chr5:58779957-58780154
Length
214 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTGTGTACCCTTAGATA
3' ss Score
10.08
5' ss Seq
CTAGTATGA
5' ss Score
0.87
Exon sequences
Seq C1 exon
GTTGGCGGCACTAAAACAGGAGTGGTGCGTTATGTGGGAGAGACTGACTTTGCCAAGGGCGAGTGGTGTGGAGTGGAGCTGGACGAGCCGTTAGGGAAAAACGATGGAGCTGTTGCTGGAACCAG
Seq A exon
ATATTTCCAGTGCCCACCCAAGTTTGGCCTCTTTGCTCCAATCCACAAGGTGATTCGCATCGGCTTCCCGTCCACCAGTCCAGCTAAAGCTAAGAAGAGCAAGCGTATGGCGATGGGTGTGTCGTCTCTGGCCCACAGCCCCTCCAGTTCCTCCATCAGCTCTGTCAGCTCTGTGGCGTCCAGCGTTGGAGGCCGTCCCAGCCGCACAGGCCTA
Seq C2 exon
TTGACAGAGACGTCATCGAGGTATGCGCGGAAGATCTCGGGAACCACGGCTTTGCAGGAAGCCCTGAAGGAGAAACAGCAGCACATCGAGCAGCTCCTGGCCGAGAGAGACCTGGAGCGGGCTGAAGTCGCGAAGGCCACCAGCCATATCTGCGAGGTGGAAAAGGAGCTGGCGGCGCTGAAGGCGCGACATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059596-'7-8,'7-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.416 C2=0.239
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=FE(62.1=100)
A:
PF0130220=CAP_GLY=PD(27.3=25.0),PF041569=IncA=PU(22.0=48.6)
C2:
PF041569=IncA=FE(40.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCGGCACTAAAACAGGAG
R:
CTCCTTTTCCACCTCGCAGAT
Band lengths:
292-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]