MmuEX6021424 @ mm10
Exon Skipping
Gene
ENSMUSG00000063146 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:MGI Symbol;Acc:MGI:1313136]
Coordinates
chr5:134516081-134518031:-
Coord C1 exon
chr5:134517907-134518031
Coord A exon
chr5:134516816-134517029
Coord C2 exon
chr5:134516081-134516278
Length
214 bp
Sequences
Splice sites
3' ss Seq
GGCTCTCTTACGCTCCCCAGGTA
3' ss Score
7.47
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GTTGGTGGGACGAAGACCGGTGTGGTGCGATATGTTGGGGAGACGGACTTTGCCAAAGGCGAGTGGTGTGGTGTGGAGCTGGATGAGCCCCTCGGGAAGAACGACGGGGCGGTGGCAGGAACCAG
Seq A exon
GTACTTCCAGTGCCCACCCAAGTTCGGTCTCTTTGCACCAATCCACAAGGTCATCCGAATTGGCTTCCCATCCACCAGTCCAGCCAAGGCCAAGAAGACCAAACGCATGGCCATGGGTGTCTCCGCTTTGACCCACAGCCCCAGCAGCTCTTCCATTAGCTCTGTCAGCTCTGTGGCCTCCTCTGTTGGTGGCCGGCCCAGCCGCAGTGGCCTG
Seq C2 exon
CTCACAGAGACCTCTTCGCGCTATGCCCGGAAGATCTCAGGCACCACAGCTCTGCAGGAGGCCCTGAAGGAGAAGCAGCAGCACATTGAACAGCTGCTGGCTGAGCGCGACTTGGAGAGAGCCGAAGTAGCCAAGGCTACCAGCCATATCTGTGAGGTGGAGAAGGAGATCGCCCTGCTGAAGGCACAGCATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063146-'17-10,'17-8,19-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.403 C2=0.106
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=FE(62.1=100)
A:
PF0130220=CAP_GLY=PD(27.3=25.0),PF116003=CAF-1_p150=PU(23.2=61.1)
C2:
PF116003=CAF-1_p150=FE(34.2=100)
Main Skipping Isoform:
ENSMUST00000100647fB7841
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCGATATGTTGGGGAG
R:
CTGCTCATGCTGTGCCTTCAG
Band lengths:
302-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types