GgaEX0001819 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr27:3909179-3910251:+
Coord C1 exon
chr27:3909179-3909267
Coord A exon
chr27:3909656-3910011
Coord C2 exon
chr27:3910143-3910251
Length
356 bp
Sequences
Splice sites
3' ss Seq
TATGTCCGTTTCTCCCCCAGGAC
3' ss Score
12.78
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGTGCAACAACGATTCCCTGAGCATCAGCAAGAGCCCCCCGTGCAAGAACAGCTTTGGGATCGAGAACTCGCTCTCCACTTCCTCCGAG
Seq A exon
GACCCTCATTCAGGTTGCCCCAGCAGGAGCAGCTCCTCCCTGTCCTTCCACAGCACTCCTCCGCCCCTGCCCATGCTGCAGCAGAGTCCTGCCTCGCTACCCCTTCCCGGGGTGCAGCAGGTGAATGGCCTGGCCAGGGTGGCAGGCAGCGGGCTGGGGGGTGGCACCACTGCCAGCCACAGCCTCTCCACGGTGCCCATGGTGGACGGCCTGATGGGGACCGTGGCAGGAGGTCAGCAGATGCCCATCAACGGGATCCTGGGGAATCTGAACGGAGCTCAGGCCGCCCAGCCTCCAAGCGCGCTGACGCAGGCGAGCGGCCCTCCGACCTTGCAGCTCTCCACCAGCCTGAGCAG
Seq C2 exon
CATGCCGAGCCTGAGTCCCCTGACGGAGCAGCAGCGGCACGTCTTGCACCAACACGAGCAGCAGCTCCAGCAGCTCCAGCAGCTCCTGACTTCTCAACCGCTTAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.950 C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAACAACGATTCCCTGA
R:
CGGATTAAGCGGTTGAGAAGTCA
Band lengths:
198-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]