MmuEX0029246 @ mm10
Exon Skipping
Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97677148-97679055:+
Coord C1 exon
chr11:97677148-97677236
Coord A exon
chr11:97678314-97678663
Coord C2 exon
chr11:97678965-97679055
Length
350 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCCCTCCCTCCCCAGGAC
3' ss Score
13.5
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGGCAGCAGTGACTCCCTGAGCGTCAGCAAGAGCCCTCCCGGGAAGAACAGCCTCGGCCTGGACAATTCCCTGTCCACCTCTTCCGAG
Seq A exon
GACCCACACTCAGGCTGCCCGAGCCGCAGCAGCTCTTCGCTCTCCTTCCACAGCACGCCCCCACCGCTGCCCCTGCTCCAGCAGAGCCCGGCTACTCTGCCCTTGGCCCTGCCTGGGGCTCCTGCCCCACTCCCACCCCAGCCACAGAACGGGCTGGGCCGGGCGCCTGGAGCAACGGGGCTGGGAGCCATGCCCATGGCTGAGGGGCTGTTGGGTGGGCTGGCAGGCAGCGGGAGCCTGCCCCTCAATGGGCTTCTGGGAGGGTTGAATGGGGCTGCTGCTCCCAACCCCGCGGGCTTGAGCCAGGCTGGCGGGGCCCCCACGCTTCAACTGCCAGGTTGTCTCAACAG
Seq C2 exon
CCTGACAGAGCAGCAGAGACACCTCCTTCAGCAGCAAGAGCAGCAGCTGCAGCAACTGCAGCAGCTCCTGGCCTCTCCACAGCTGACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.906 C2=0.839
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types