HsaEX0039578 @ hg19
Exon Skipping
Gene
ENSG00000108292 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:7138]
Coordinates
chr17:36876912-36879021:+
Coord C1 exon
chr17:36876912-36877000
Coord A exon
chr17:36878131-36878480
Coord C2 exon
chr17:36878931-36879021
Length
350 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCCCTCCCTCCCCAGGAC
3' ss Score
13.5
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCGGCAGCAGCGACTCCTTGAGCACCAGCAAGAGCCCTCCGGGAAAGAGCAGCCTCGGCCTGGACAACTCGCTGTCCACTTCTTCTGAG
Seq A exon
GACCCACACTCAGGCTGCCCGAGCCGCAGCAGCTCGTCGCTGTCCTTCCACAGCACGCCCCCACCGCTGCCCCTCCTCCAGCAGAGCCCTGCCACTCTGCCCCTGGCCCTGCCTGGGGCCCCTGCCCCACTCCCGCCCCAGCCGCAGAACGGGTTGGGCCGGGCACCCGGGGCAGCGGGGCTGGGGGCCATGCCCATGGCTGAGGGGCTGTTGGGGGGGCTGGCAGGCAGTGGGGGCCTGCCCCTCAATGGGCTCCTTGGGGGGTTGAATGGGGCCGCTGCCCCCAACCCCGCAAGCTTGAGCCAGGCTGGCGGGGCCCCCACGCTGCAGCTGCCAGGCTGTCTCAACAG
Seq C2 exon
CCTTACAGAGCAGCAGAGACATCTCCTTCAGCAGCAAGAGCAGCAGCTCCAGCAACTCCAGCAGCTCCTGGCCTCCCCGCAGCTGACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108292_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.897 C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)