BtaEX0022547 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011532 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr19:39952872-39954925:+
Coord C1 exon
chr19:39952872-39952960
Coord A exon
chr19:39954081-39954430
Coord C2 exon
chr19:39954835-39954925
Length
350 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCCCTCCCTCCCCAGGAC
3' ss Score
13.5
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCGGCAGCAGCGATTCCTTGAGCACCAGCAAAAGCCCTCCGGGGAAGAACAGTCTGGGCCTGGACAACTCGCTGTCCACGTCTTCCGAG
Seq A exon
GACCCACACTCAGGCTGCCCGAGCCGCAGCAGCTCGTCGCTGTCCTTCCACAGCACGCCCCCACCGCTGCCCCTGCTCCAGCAGAGCCCTGCTACTCTGCCCCTGGCCCTGCCTGGGGGCCCTGCCCCGCTCCCGCCTCAGCCACAGAATGGGCTGGGCCGGGCACCCGGGGCAGCGGGGCTGGGGGCTATGCCCATGGCTGAGGGGCTGTTGGGGGGGCTGGCGGGCAGCGGGGCCCTGCCCCTCAATGGGCTTCTGGGGGGGTTGAATGGGGCTGCCGCCCCCAACCCTGCAGGCTTGAGCCAGGCTGGCGGGGCCCCCACGCTGCAGCTGCCAGGTTGTCTCAACAG
Seq C2 exon
CCTCACCGAGCAGCAGCGACACCTCCTGCAGCAGCAGGAACAGCAGCTGCAGCAGCTCCAGCAGCTCCTGGCCTCCCCACAGCTGACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011532_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.889 C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development