BtaINT0093714 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011532 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr19:39954081-39954925:+
Coord C1 exon
chr19:39954081-39954430
Coord A exon
chr19:39954431-39954834
Coord C2 exon
chr19:39954835-39954925
Length
404 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTTTTGTCCCCCTGCCTCAGCCT
3' ss Score
5.33
Exon sequences
Seq C1 exon
GACCCACACTCAGGCTGCCCGAGCCGCAGCAGCTCGTCGCTGTCCTTCCACAGCACGCCCCCACCGCTGCCCCTGCTCCAGCAGAGCCCTGCTACTCTGCCCCTGGCCCTGCCTGGGGGCCCTGCCCCGCTCCCGCCTCAGCCACAGAATGGGCTGGGCCGGGCACCCGGGGCAGCGGGGCTGGGGGCTATGCCCATGGCTGAGGGGCTGTTGGGGGGGCTGGCGGGCAGCGGGGCCCTGCCCCTCAATGGGCTTCTGGGGGGGTTGAATGGGGCTGCCGCCCCCAACCCTGCAGGCTTGAGCCAGGCTGGCGGGGCCCCCACGCTGCAGCTGCCAGGTTGTCTCAACAG
Seq A exon
GTGAGGGAGAGCTCAGCCTGGGGAAGGGGATGGGGAGGCTGGCTCTGGGAGGGACTCCCCCTACAAACACCCACATCCCTCAGAAGGGAAGCTCTCCTCCTGTCTTACGGGGTCTAGAAAATCCAGTCACCTCTTGGCCCCAGCTTCTCCTTAGATGTAGACGTGAGAGCCCTCTGGATGGTAGCTCTTCAGGGACAAAAGTCGTTTGTTTATTCCTTGTGCCCTAGCTGAGGTTTTCCCTCTGGGGAAGTTTTCCCATCTCATGTGTCTCCTCCCACCGTCCTCTCTGAGCTCAGTCTGTTTCTCTCTCCACCTGGGCCTGAGGGAGAGTGGGAACTTAGGGGGGCAGGGAGGAGTGTTTCCCTGTCTCTTCCCATGGTCTGTGTTTTGTCCCCCTGCCTCAG
Seq C2 exon
CCTCACCGAGCAGCAGCGACACCTCCTGCAGCAGCAGGAACAGCAGCTGCAGCAGCTCCAGCAGCTCCTGGCCTCCCCACAGCTGACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011532:ENSBTAT00000015325:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCGCTGTCCTTCCACAG
R:
GAGGTGTCGCTGCTGCTC
Band lengths:
343-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development