GgaINT0143431 @ galGal4
Intron Retention
Gene
ENSGALG00000001574 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr27:4000273-4000868:+
Coord C1 exon
chr27:4000273-4000628
Coord A exon
chr27:4000629-4000759
Coord C2 exon
chr27:4000760-4000868
Length
131 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCCGCTCCGCTCCCTTGCAGCAT
3' ss Score
9.43
Exon sequences
Seq C1 exon
GACCCTCATTCAGGTTGCCCCAGCAGGAGCAGCTCCTCCCTGTCCTTCCACAGCACTCCTCCGCCCCTGCCCATGCTGCAGCAGAGTCCTGCCTCGCTACCCCTTCCCGGGGTGCAGCAGGTGAATGGCCTGGCCAGGGTGGCAGGCAGCGGGCTGGGGGGTGGCACCACTGCCAGCCACAGCCTCTCCACGGTGCCCATGGTGGACGGCCTGATGGGGACCGTGGCAGGAGGTCAGCAGATGCCCATCAACGGGATCCTGGGGAATCTGAACGGAGCTCAGGCCGCCCAGCCTCCAAGCGCGCTGACGCAGGCGAGCGGCCCTCCGACCTTGCAGCTCTCCACCAGCCTGAGCAG
Seq A exon
GTGAGGACGGGGACAGCCGGGCCCTTTCCAGCAGAAGTTTAGCACCGGGAGGGAGGGAGGGAGGGAGGGATCCTTGCACACGCAGGACCAAGGCGGGCCGTGCTGATGCTGGCCGCTCCGCTCCCTTGCAG
Seq C2 exon
CATGCCGAGCCTGAGTCCCCTGACGGAGCAGCAGCGGCACGTCTTGCACCAACACGAGCAGCAGCTCCAGCAGCTCCAGCAGCTCCTGACTTCTCAACCGCTTAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=NA C2=0.982
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGTGGACGGCCTGATG
R:
GGTTGAGAAGTCAGGAGCTGC
Band lengths:
258-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]