HsaINT0103733 @ hg38
Intron Retention
Gene
ENSG00000275023 | MLLT6
Description
MLLT6, PHD finger domain containing [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr17:38721878-38722768:+
Coord C1 exon
chr17:38721878-38722227
Coord A exon
chr17:38722228-38722677
Coord C2 exon
chr17:38722678-38722768
Length
450 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACCCCCCACCCCCACCTCAGCCT
3' ss Score
4.93
Exon sequences
Seq C1 exon
GACCCACACTCAGGCTGCCCGAGCCGCAGCAGCTCGTCGCTGTCCTTCCACAGCACGCCCCCACCGCTGCCCCTCCTCCAGCAGAGCCCTGCCACTCTGCCCCTGGCCCTGCCTGGGGCCCCTGCCCCACTCCCGCCCCAGCCGCAGAACGGGTTGGGCCGGGCACCCGGGGCAGCGGGGCTGGGGGCCATGCCCATGGCTGAGGGGCTGTTGGGGGGGCTGGCAGGCAGTGGGGGCCTGCCCCTCAATGGGCTCCTTGGGGGGTTGAATGGGGCCGCTGCCCCCAACCCCGCAAGCTTGAGCCAGGCTGGCGGGGCCCCCACGCTGCAGCTGCCAGGCTGTCTCAACAG
Seq A exon
GTGAGGGAGAGCTCAGCCCTGGGAAGGGGAACAGGGTGGGGGGCTGGCTCTGGGAAGGGAGGGATTTTCCCCAAAACACCCACAATCCCTAAAAGGAAAAATGGCCTCTGGTCTCACAGGGTATATAATCCTAGTCACCTCTTGGCCTCTAAGGACTCCACAGACTGTTAGACATGTGTGTCCTCTGGACGGTAGCTCCCCAGGGACAAAAGAATTGTTGACTTCCTGTCCTGCACTCTAGGATTTCCTTCTGGGACAGTTCTTCTAAATCAGACCTGTATCCCTCTTGCTGCACCCTATGAGCACGGTGCTCTAAGATCGCACATCCCTGCCTTGCTTCCCCTGGGTCTGAGGGAGTCTAGGGGCTTGGGATTAGGAGCAGGAGTGTTTCCCTGGCCCTCCCCCATGGTCTGTGTGTTGTCCCCCCCCCACCCCCCACCCCCACCTCAG
Seq C2 exon
CCTTACAGAGCAGCAGAGACATCTCCTTCAGCAGCAAGAGCAGCAGCTCCAGCAACTCCAGCAGCTCCTGGCCTCCCCGCAGCTGACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000275023:ENST00000621332:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=NA C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCTTCCACAGCACGC
R:
CTGCTCTTGCTGCTGAAGGAG
Band lengths:
354-804
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development