RnoINT0092952 @ rn6
Intron Retention
Gene
ENSRNOG00000053285 | Mllt6
Description
MLLT6, PHD finger containing [Source:RGD Symbol;Acc:1306689]
Coordinates
chr10:85620807-85621827:+
Coord C1 exon
chr10:85620807-85621156
Coord A exon
chr10:85621157-85621736
Coord C2 exon
chr10:85621737-85621827
Length
580 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATGTGTCATCCCTGCCTCAGCCT
3' ss Score
5.3
Exon sequences
Seq C1 exon
GACCCACACTCAGGCTGCCCGAGCCGCAGCAGCTCATCGCTCTCCTTCCACAGCACGCCCCCACCGCTGCCCCTGCTCCAGCAGAGCCCTGCCACTCTGCCCTTGGCCCTGCCTGGGGCTCCTGCCCCACTCCCACCCCAGCCACAGAATGGGCTGGGCCGGGCGCCCGGAGCAGCGGGGCTGGGAGCCATGCCCATGGCAGAGGGGCTGTTGGGTGGGCTGGCAGGCAGCGGGAGCCTGCCCCTCAATGGGCTTCTGGGAGGGTTGAATGGGGCTGCTGCTCCCAACCCTGCGGGCTTGAGCCAGGCTGGCGGGGCCCCCACGCTTCAACTGCCAGGTTGTCTTAACAG
Seq A exon
GTGAGGGAAAGTTCAGCCCTAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCTTTATTCCCCAAAGGAAAAACATCCCCTGGCCCCATAGGGTTTTTAGTCCCCGGCAGTCTGTTGACTTAAGGGGCTCCCCTAGAGTGTCCAGATACAGTCCAGGGGACAAGCTCTTATCCATGTCCCTACTGTAAGTCTTCTAGACAGGTTGTCCGTCTGTCTGCCTGGGCCTAAGGGAGTCTGGGAGCTCCTAGGTGTGGGGGGTGCTTGTGCGTCTCTGCACCTCCTCATGTGTCATCCCTGCCTCAG
Seq C2 exon
CCTCACAGAGCAGCAGAGACACCTCCTTCAGCAGCAAGAGCAGCAACTACAGCAGCTGCAGCAGCTTCTGGCCTCTCCACAGCTGACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053285:ENSRNOT00000092122:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCGCTCTCCTTCCACAG
R:
CTCTTGCTGCTGAAGGAGGTG
Band lengths:
358-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]