MmuINT0099396 @ mm10
Intron Retention
Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97678314-97679055:+
Coord C1 exon
chr11:97678314-97678663
Coord A exon
chr11:97678664-97678964
Coord C2 exon
chr11:97678965-97679055
Length
301 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTGTGTTATCCCTGCCTCAGCCT
3' ss Score
5.41
Exon sequences
Seq C1 exon
GACCCACACTCAGGCTGCCCGAGCCGCAGCAGCTCTTCGCTCTCCTTCCACAGCACGCCCCCACCGCTGCCCCTGCTCCAGCAGAGCCCGGCTACTCTGCCCTTGGCCCTGCCTGGGGCTCCTGCCCCACTCCCACCCCAGCCACAGAACGGGCTGGGCCGGGCGCCTGGAGCAACGGGGCTGGGAGCCATGCCCATGGCTGAGGGGCTGTTGGGTGGGCTGGCAGGCAGCGGGAGCCTGCCCCTCAATGGGCTTCTGGGAGGGTTGAATGGGGCTGCTGCTCCCAACCCCGCGGGCTTGAGCCAGGCTGGCGGGGCCCCCACGCTTCAACTGCCAGGTTGTCTCAACAG
Seq A exon
GTGAGGGAAAGTTCAGCCCTAGGGAGGGGGTGGGAGGCTGGATATGGGAGGGATGCCCCCCAAAGCCCCTTATTCCCCCAAAGGGAAAAATAATTCCCCGGCCCTATAGGATTTATAGATCTGGCAGTCTGTCGACTTAAGGGACTCCCCAGATACAGGGAACAAGATCTTATCCATGTCCCTACTGGAGGTCTTCTAGACAGGCTGTCCATCTGCCTGGGCCTGAGGGGATCTGGGAGCTCCTGGGTGTTGTGGGGTATGGGTCTCTTGCACCTCCTCATCTGTGTTATCCCTGCCTCAG
Seq C2 exon
CCTGACAGAGCAGCAGAGACACCTCCTTCAGCAGCAAGAGCAGCAGCTGCAGCAACTGCAGCAGCTCCTGGCCTCTCCACAGCTGACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437:ENSMUST00000044730:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=NA C2=0.839
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCGCTCTCCTTCCACAG
R:
CTCTTGCTGCTGAAGGAGGTG
Band lengths:
358-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types