RnoEX0054869 @ rn6
Exon Skipping
Gene
ENSRNOG00000053285 | Mllt6
Description
MLLT6, PHD finger containing [Source:RGD Symbol;Acc:1306689]
Coordinates
chr10:85619677-85621827:+
Coord C1 exon
chr10:85619677-85619765
Coord A exon
chr10:85620807-85621156
Coord C2 exon
chr10:85621737-85621827
Length
350 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCCCTCCCTCCCCAGGAC
3' ss Score
13.5
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGGCAGCAGTGACTCCCTGAGCATCAGCAAGAGCCCTCCGGGGAAGAACTGCCTTGGCCTGGACAACACCCTGTCCACATCTTCTGAG
Seq A exon
GACCCACACTCAGGCTGCCCGAGCCGCAGCAGCTCATCGCTCTCCTTCCACAGCACGCCCCCACCGCTGCCCCTGCTCCAGCAGAGCCCTGCCACTCTGCCCTTGGCCCTGCCTGGGGCTCCTGCCCCACTCCCACCCCAGCCACAGAATGGGCTGGGCCGGGCGCCCGGAGCAGCGGGGCTGGGAGCCATGCCCATGGCAGAGGGGCTGTTGGGTGGGCTGGCAGGCAGCGGGAGCCTGCCCCTCAATGGGCTTCTGGGAGGGTTGAATGGGGCTGCTGCTCCCAACCCTGCGGGCTTGAGCCAGGCTGGCGGGGCCCCCACGCTTCAACTGCCAGGTTGTCTTAACAG
Seq C2 exon
CCTCACAGAGCAGCAGAGACACCTCCTTCAGCAGCAAGAGCAGCAACTACAGCAGCTGCAGCAGCTTCTGGCCTCTCCACAGCTGACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053285_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.889 C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]