GgaEX0003079 @ galGal3
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2771445-2776060:+
Coord C1 exon
chr8:2771445-2771625
Coord A exon
chr8:2774200-2774364
Coord C2 exon
chr8:2775924-2776060
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTGACACGTATCTATTACAGTTT
3' ss Score
7.08
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
TATTTGTGGAATTCAGCATCTGGAACGAGCAGGAAACAAGCTGACTCTCTTTGACTCCCTTTATTTCTGCATAGTGACATTTTCCACTGTGGGCTTTGGGGATGTTACACCCAAGATATGGCCTTCAAAGCTGCTTGTTGTCATTATGATCTGTGTTGCTCTTGTGGTGTTGCCCATACAG
Seq A exon
TTTGAACAGCTGGCGTATTTGTGGATGGAGAGACAAAAGTCTGGTGGCAACTACAGTCGACACAGAGCCCAGACGGAAAAACATGTTGTGCTGTGTGTCAGCTCTCTGAAGATTGATTTACTTATGGATTTCTTAAATGAATTCTATGCTCACCCTAGGCTGCAG
Seq C2 exon
GACTATTATGTTGTTATTTTGTGTCCTACTGAAATGGATGCTCAGGTCCGGAGAGTGTTACAAATCCCGATGTGGTCTCAAAGAGTTATCTATCTCCAAGGCTCAGCACTAAAAGATCAAGACCTGTTGAGAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=FE(71.4=100)
A:
PF0788511=Ion_trans_2=PD(9.5=14.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGGAACGAGCAGGAAA
R:
ACTCTTTGAGACCACATCGGGA
Band lengths:
252-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]