DreEX6082909 @ danRer10
Exon Skipping
Gene
ENSDARG00000079484 | kcnt1
Description
potassium channel, subfamily T, member 1 [Source:ZFIN;Acc:ZDB-GENE-091231-1]
Coordinates
chr21:4741961-4744719:-
Coord C1 exon
chr21:4744536-4744719
Coord A exon
chr21:4744187-4744351
Coord C2 exon
chr21:4741961-4742097
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTCATCTTCTGTGTCTGTAGTTT
3' ss Score
7.48
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CACGTGTGGGATCCAGCATTTGGAGCGGGCAGGTAAGAAGAGTCTGTCGCTCTTCAACGCTCTGTATTTCTGCATCGTGACCTTCTCAACGGTGGGTTTCGGGGACGTAACGCCCCAGATCTGGCCTTCTCAGCTGCTGGTGGTGGTGATGATCTGCGTGGCCCTCGTCGTGCTGCCGCTTCAG
Seq A exon
TTTGAGGAGTTGATTTATCTGTGGATGGAAAGACAGAAATCTGGAGGAAACTACAGCAGGCATCGCGCTCAGACAGAGAGACACGTGGTTTTATGTGTCAGTACTCTGAAAATCGACCTGCTGATGGACTTTCTCAATGAGTTCTACGCTCACCCCCACACACAG
Seq C2 exon
GATTATTATGTGGTCATCTTGTGTCCGTGTGAAGTGGACGTTCAGGTCAGGAGGATTTTACAGATTCCTCTCTGGTCACAGAGGGTCATTTATCTTCAAGGCTCCGCCCTCAAAAACCAGGATTTGCTGAGAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079484-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=FE(76.2=100)
A:
PF0788511=Ion_trans_2=PD(10.0=14.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTCTGTATTTCTGCATCGT
R:
AATCCTGGTTTTTGAGGGCGG
Band lengths:
252-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]