RnoEX6015930 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3341988-3346786:+
Coord C1 exon
chr3:3341988-3342168
Coord A exon
chr3:3346194-3346358
Coord C2 exon
chr3:3346650-3346786
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCATTACTCCCTCTCCACAGTTT
3' ss Score
9.82
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GACCTGTGGGATTCAGCACTTAGAGCGGGCAGGTGGCAACTTGAACTTGCTGACCTCCTTCTACTTCTGCATTGTGACTTTCTCAACCGTGGGCTTCGGTGATGTGACACCCAAGATCTGGCCATCCCAGCTCCTGGTGGTCATCCTGATCTGTGTCACCCTTGTGGTGCTCCCACTGCAG
Seq A exon
TTTGAAGAGCTTGTCTACCTCTGGATGGAGCGGCAGAAGTCAGGGGGCAACTATAGCCGCCACCGAGCACGGACAGAGAAGCATGTGGTCCTGTGTGTGAGCTCCCTCAAGATCGATCTCCTCATGGATTTCCTGAATGAGTTCTATGCCCACCCCCGTCTCCAG
Seq C2 exon
GACTACTACGTGGTCATCCTGTGTCCCTCGGAAATGGATGTCCAGGTGCGCAGGGTCCTACAGATTCCCCTGTGGTCCCAGCGTGTCATCTACCTCCAGGGCTCTGCCCTCAAGGACCAGGACCTCATGCGAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283-'14-21,'14-19,15-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=FE(74.1=100)
A:
PF0788511=Ion_trans_2=PD(9.9=14.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCAGCACTTAGAGCGGG
R:
GGGACCACAGGGGAATCTGTA
Band lengths:
252-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]