BtaEX6047095 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103408793-103419325:+
Coord C1 exon
chr11:103408793-103408973
Coord A exon
chr11:103418667-103418831
Coord C2 exon
chr11:103419189-103419325
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTCACACGCTTTACCTGCAGTTT
3' ss Score
8.39
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GACCTGCGGCATCCAGCACCTGGAGCGCGCGGGCGACAACCTGTCCCTCCTGACATCCTTCTACTTCTGCATCGTCACCTTCTCCACCGTGGGCTATGGGGACGTGACGCCCAAGATCTGGCCGTCCCAGCTGCTGGTGGTCATCATGATCTGTGTGGCCCTGGTGGTGCTCCCGCTGCAG
Seq A exon
TTTGAGGAACTCGTCTACCTGTGGATGGAGCGGCAGAAGTCGGGGGGCAACTACAGCCGCCACCGGGCCCAGACGGAGAAGCATGTGATCCTGTGCGTGAGCTCCCTCAAGATCGACCTGCTCATGGACTTTCTGAACGAGTTCTACGCGCATCCACGATTGCAG
Seq C2 exon
GACTACTACGTCGTCATCCTGTGCCCCACGGAGATGGACATCCAGGTTCGCAGGGTCCTGCAGATCCCACTGTGGTCCCAGCGGGTCATCTACCTCCAGGGCTCCGCGCTCAAGGATCAGGACCTCATGCGGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975-'20-15,'20-14,21-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=FE(74.1=100)
A:
PF0788511=Ion_trans_2=PD(9.9=14.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATCGTCACCTTCTCCAC
R:
CGCATGAGGTCCTGATCCTTG
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]