DreEX6014309 @ danRer10
Exon Skipping
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64837752-64841296:+
Coord C1 exon
chr5:64837752-64837932
Coord A exon
chr5:64839037-64839201
Coord C2 exon
chr5:64841160-64841296
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTTTTTCACACCAGTTC
3' ss Score
7.46
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGCTTGTGGGATTCAGCACCTGGAGCGAGCAGGGAAGAATCTGACACTCTTTGACGCTTTATATTTCTGCATCGTCACCTTCTCCACTGTTGGATATGGAGATGTGACGCCCAGAATCTGGCCCTCTCAGCTGCTGGTGGTCATCATGATCTGTGTGGCGCTGGTGGTGCTGCCATTACAG
Seq A exon
TTCGAGGAGTTGGCGTATCTATGGATGGAGAGGCAGAAGTCAGGTGGAAACTACAGCAGACACCGCGCTCAGACAGAGAAACACGTGGTGCTCTGCGTCACCTCACTCAAAATAGACCTGCTCATGGATTTCCTCAATGAGTTCTATGCCCACCCGAGACTACAG
Seq C2 exon
GACTATTATGTGGTGATCCTCTGTCCCACGGAGATGGACATCCAGGTGCGGCGAATACTGCAGATCCCACTGTGGTCTCAGCGGGTCATCTACCTCCAAGGCTCTGCACTGAAGGACCAAGACCTCATGAGGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=FE(85.7=100)
A:
PF0788511=Ion_trans_2=PD(11.5=16.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGGGATTCAGCACCTGG
R:
GTGGGATCTGCAGTATTCGCC
Band lengths:
249-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]