MmuEX6099660 @ mm10
Exon Skipping
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25894282-25898835:+
Coord C1 exon
chr2:25894282-25894462
Coord A exon
chr2:25898271-25898435
Coord C2 exon
chr2:25898699-25898835
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCATTGCTCCCTCTCCACAGTTT
3' ss Score
10.38
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GACCTGTGGGATCCAGCACCTGGAGCGAGCAGGTGGCAACTTGAACCTGCTGACCTCCTTCTACTTCTGCATCGTGACTTTCTCAACTGTGGGCTTCGGTGATGTGACGCCCAAGATCTGGCCATCCCAGCTCCTGGTGGTCATCCTGATCTGTGTCACCCTTGTGGTGCTCCCACTGCAA
Seq A exon
TTTGAAGAGCTTGTCTACCTCTGGATGGAGCGTCAGAAGTCAGGGGGCAACTATAGCCGCCACCGAGCACGGACGGAGAAGCACGTAGTCCTGTGTGTGAGCTCCCTCAAGATTGATCTCCTCATGGACTTCCTGAATGAGTTCTATGCCCATCCCCGGCTCCAG
Seq C2 exon
GACTACTACGTGGTCATCCTGTGTCCCTCTGAAATGGACGTCCAGGTGCGCAGGGTGCTGCAGATTCCCCTGTGGTCCCAGCGGGTCATCTACCTCCAGGGCTCTGCCCTCAAGGACCAGGATCTCATGCGAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740-'15-30,'15-27,18-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=FE(74.1=100)
A:
PF0788511=Ion_trans_2=PD(9.9=14.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAACCTGCTGACCTCCT
R:
AGAGCCCTGGAGGTAGATGAC
Band lengths:
248-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types