GgaEX6015486 @ galGal3
Exon Skipping
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8918366-8919215:-
Coord C1 exon
chr17:8919035-8919215
Coord A exon
chr17:8918729-8918893
Coord C2 exon
chr17:8918366-8918502
Length
165 bp
Sequences
Splice sites
3' ss Seq
GCTGTGCCCTCTGCTTGCAGTTT
3' ss Score
9.37
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CACCTGCGGCATCCAGCATTTGGAGAGAGCAGGAGAGAAGCTCTCCCTCTTCAAGTCCTTCTACTTTTGCATCGTCACCTTTTCCACTGTGGGCTATGGGGATGTGACACCCAAGATCTGGCCTTCCCAGCTCCTTGTCGTCATCATGATCTGTGTTGCGCTGGTTGTGCTGCCGCTGCAG
Seq A exon
TTTGAGGAACTTGTCTACTTGTGGATGGAGCGGCAGAAGTCGGGGGGCAACTACAGCCGGCACCGTGCCCAGACAGAGAAGCACGTCGTGCTGTGCGTCAGCTCACTCAAGATTGACCTCCTCATGGACTTCCTCAATGAGTTCTATGCCCACCCACGCCTGCAG
Seq C2 exon
GACTACTACGTGGTGATCCTCTGCCCCACGGAGATGGACATCCAGGTGCGGCGGGTACTGCAGATCCCTCTGTGGTCACAGCGGGTGATCTACCTGCAGGGCTCCGCGCTGAAGGACCAGGACCTCATGAGAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'11-13,'11-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=FE(75.0=100)
A:
PF0788511=Ion_trans_2=PD(10.0=14.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCACCTTTTCCACTGTGGG
R:
TTGGCTCTCATGAGGTCCTGG
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]