MmuEX6027923 @ mm10
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140383001-140428945:+
Coord C1 exon
chr1:140383001-140383095
Coord A exon
chr1:140426828-140426992
Coord C2 exon
chr1:140428809-140428945
Length
165 bp
Sequences
Splice sites
3' ss Seq
GGGTGGAAAATTCATTACAGTTT
3' ss Score
0.8
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AATGATCTCCATAGAGCCATTCAGCGTACACAGTCTGCAATGTTTAATCAAGTTTTGATTTTGATATCTACTTTACTATGCCTTATCTTCACTTG
Seq A exon
TTTGAACAGTTGGCCTATTTGTGGATGGAGAGACAAAAGTCAGGAGGAAACTACAGTCGACACAGAGCTCAGACAGAGAAGCATGTTGTCCTGTGTGTCAGCTCCTTGAAGATTGACTTACTTATGGATTTTCTAAATGAGTTCTATGCGCATCCAAGACTACAG
Seq C2 exon
GATTATTACGTGGTGATTTTGTGTCCCACGGAGATGGATGTGCAAGTTCGGAGAGTACTACAGATTCCAATGTGGTCCCAGAGAGTGATCTACCTTCAAGGCTCTGCCCTTAAAGACCAGGATCTCCTGAGAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726_MULTIEX2-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=PU(16.7=43.8)
A:
PF0788511=Ion_trans_2=PD(9.5=14.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATAGAGCCATTCAGCGT
R:
AGGAGATCCTGGTCTTTAAGGGC
Band lengths:
218-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types