RnoEX6044512 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57308610-57312866:+
Coord C1 exon
chr13:57308610-57308790
Coord A exon
chr13:57309866-57310030
Coord C2 exon
chr13:57312730-57312866
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATGTGGAAAATTCATTACAGTTT
3' ss Score
2.41
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
CATTTGTGGAATTCAGCATCTGGAACGAATTGGAAAGAAACTCAATCTCTTTGACTCCCTTTATTTCTGCATTGTGACATTTTCTACTGTGGGCTTTGGGGATGTTACTCCTGAAACATGGTCCTCCAAGCTTTTTGTTGTTGCTATGATCTGCGTTGCTCTTGTAGTTCTCCCCATACAG
Seq A exon
TTTGAACAGCTGGCCTATTTGTGGATGGAGAGACAAAAGTCGGGAGGAAACTATAGTCGACACAGAGCTCAGACTGAGAAGCATGTTGTTCTGTGTGTCAGCTCATTGAAGATTGACTTGCTTATGGATTTTTTGAATGAATTCTATGCACATCCAAGACTGCAG
Seq C2 exon
GATTATTATGTGGTGATTTTGTGTCCCACGGAGATGGATGTGCAAGTTCGGAGAGTGCTACAGATTCCAATGTGGTCCCAGAGAGTGATCTACCTTCAAGGCTCTGCCCTTAAAGACCAGGATCTCCTGAGAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-'14-19,'14-18,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=FE(71.4=100)
A:
PF0788511=Ion_trans_2=PD(9.5=14.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCATCTGGAACGAATTGGA
R:
ACTCTCTGGGACCACATTGGA
Band lengths:
255-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]