GgaEX0004246 @ galGal3
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
NA
Coordinates
chr27:4601047-4604484:+
Coord C1 exon
chr27:4601047-4601154
Coord A exon
chr27:4601895-4601969
Coord C2 exon
chr27:4604377-4604484
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCCATTCACTATCAGGAA
3' ss Score
9.44
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AAAGGACTCCAGTGTTTCCTTGTGGTGGTGGCATTACTGTGCGTGCCGTGGATGCTGGTAGCTAAACCTCTGGTCCTTCGCCACCAGTATTTAAGGAGAAAGCACTTG
Seq A exon
GAAGGGCAGCCCGTGGAGGCCCAGGTCAGCACAGTCCCGAGCGAGCAGGCACTAGAGGCAGCAGCGGCTGCAACA
Seq C2 exon
GGAACACACAACTTCGGTGGGATCCGGGTGGGCAATGGACCAACAGAGGAGGATGCTGAGATCATCCAACACGATCAGTTATCTACCCATTCTGAGGAGGGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-'21-27,'21-26,22-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.228
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.5=100)
A:
PF0149614=V_ATPase_I=FE(3.0=100)
C2:
PF0149614=V_ATPase_I=FE(4.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGATGCTGGTAGCTAAA
R:
CTCCTCCCCCTCCTCAGAATG
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event