RnoEX0013259 @ rn6
Exon Skipping
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88948371-88952777:+
Coord C1 exon
chr10:88948371-88948478
Coord A exon
chr10:88949309-88949383
Coord C2 exon
chr10:88952670-88952777
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCCATTCACTATCAGGAA
3' ss Score
9.79
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AAAGGAATTCAGTGTTTCCTCATAGTGGTGGCAATGCTCTGTGTCCCCTGGATGCTGCTGTTTAAGCCGTTGATCCTTCGCCATCAGTACCTGAGGAAGAAGCATTTG
Seq A exon
GAAGGGCAACCCGTGGAGGCCCCAGTCACACCAGCCCCGAGCCAACAGGGATTAGAGGCAGCACCGGCTGCAACA
Seq C2 exon
GGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCGACAGAGGAGGATGCTGAAATTATTCAGCATGACCAGCTCTCCACCCATTCAGAGGACGCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.440 C2=0.306
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
PF0149614=V_ATPase_I=FE(2.9=100)
C2:
PF0149614=V_ATPase_I=FE(4.4=100)
Main Inclusion Isoform:
ENSRNOT00000087076fB1739
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTCTGTGTCCCCTGGAT
R:
AATGGGTGGAGAGCTGGTCAT
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]