GgaEX0004246 @ galGal4
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
V-type proton ATPase 116 kDa subunit a isoform 1 [Source:RefSeq peptide;Acc:NP_990055]
Coordinates
chr27:4945383-4948820:+
Coord C1 exon
chr27:4945383-4945490
Coord A exon
chr27:4946231-4946305
Coord C2 exon
chr27:4948713-4948820
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCCATTCACTATCAGGAA
3' ss Score
9.44
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AAAGGACTCCAGTGTTTCCTTGTGGTGGTGGCATTACTGTGCGTGCCGTGGATGCTGGTAGCTAAACCTCTGGTCCTTCGCCACCAGTATTTAAGGAGAAAGCACTTG
Seq A exon
GAAGGGCAGCCCGTGGAGGCCCAGGTCAGCACAGTCCCGAGCGAGCAGGCACTAGAGGCAGCAGCGGCTGCAACA
Seq C2 exon
GGAACACACAACTTCGGTGGGATCCGGGTGGGCAATGGACCAACAGAGGAGGATGCTGAGATCATCCAACACGATCAGTTATCTACCCATTCTGAGGAGGGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.243
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
PF0149614=V_ATPase_I=FE(2.9=100)
C2:
PF0149614=V_ATPase_I=FE(4.4=100)
Main Inclusion Isoform:
ENSGALT00000005154fB464
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGATGCTGGTAGCTAAA
R:
CTCCTCCCCCTCCTCAGAATG
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]