MmuEX0006884 @ mm9
Exon Skipping
Gene
ENSMUSG00000019302 | Atp6v0a1
Description
ATPase, H+ transporting, lysosomal V0 subunit A1 [Source:MGI Symbol;Acc:MGI:103286]
Coordinates
chr11:100905830-100909839:+
Coord C1 exon
chr11:100905830-100905937
Coord A exon
chr11:100906750-100906824
Coord C2 exon
chr11:100909732-100909839
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCATTCACTATCAGGAA
3' ss Score
9.53
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AAAGGAATTCAGTGTTTCCTCATCGTGGTGGCGATGCTCTGCGTCCCTTGGATGCTTCTGTTTAAGCCGCTGATCCTTCGCCATCAGTACCTGAGGAAGAAGCATTTG
Seq A exon
GAAGGGCAACCCGTGGAGGCCCCAGTCACACCAACCCCGAGCCAACAGGGACTAGAGGCAGCACCGGCTGCAACA
Seq C2 exon
GGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCGACAGAGGAGGATGCTGAAATTATTCAGCATGACCAGCTTTCCACCCATTCAGAGGACGCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019302-'23-27,'23-26,26-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.600 C2=0.254
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(14.9=100)
A:
PF0149614=V_ATPase_I=FE(2.9=100)
C2:
PF0149614=V_ATPase_I=FE(14.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCCTTGGATGCTTCTGTT
R:
CTTCTGCGTCCTCTGAATGGG
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: