HsaEX1005158 @ hg38
Exon Skipping
Gene
ENSG00000033627 | ATP6V0A1
Description
ATPase H+ transporting V0 subunit a1 [Source:HGNC Symbol;Acc:HGNC:865]
Coordinates
chr17:42501197-42507627:+
Coord C1 exon
chr17:42501197-42501304
Coord A exon
chr17:42502794-42502868
Coord C2 exon
chr17:42507520-42507627
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCCATTCACTATCAGGAA
3' ss Score
9.44
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AAAGGAATTCAGTGTTTCCTGGTAGTGGTTGCACTACTGTGTGTACCTTGGATGCTGCTGTTTAAACCATTGGTCCTTCGCCGTCAGTATTTGAGGAGAAAGCATTTG
Seq A exon
GAAGGGCAACCTGTGGAGGCCCCAGTCAGCCCAAACCCGAGCCAACAGGGACTAGAGGCAGCAGCGGCTGCAACA
Seq C2 exon
GGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCGACAGAGGAGGATGCTGAGATTATTCAGCATGACCAGCTCTCCACCCACTCAGAGGACGCAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033627_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.840 C2=0.189
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(19.6=100)
A:
PF0149614=V_ATPase_I=FE(12.6=100)
C2:
PF0149614=V_ATPase_I=FE(19.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTACCTTGGATGCTGC
R:
GTCCTCTGAGTGGGTGGAGAG
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains