GgaEX0005698 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12112058-12116724:+
Coord C1 exon
chr6:12112058-12112114
Coord A exon
chr6:12113580-12113645
Coord C2 exon
chr6:12116608-12116724
Length
66 bp
Sequences
Splice sites
3' ss Seq
CCTTCTGGTTTGATCTCCAGCTG
3' ss Score
8.25
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GAGTACCTAAGTACCACCCTTGCAGCCCTGCGCTCTAACCAGATCCTTACGCTGAAG
Seq A exon
CTGTTGCCTCTCCTCAATTCAGTGCGGCTGGCTCCACCTCCGGTCATAAAGAGACGCACTTTCCAG
Seq C2 exon
GGTGAACAAGGACAAGCAGGAATCCAAGGTCCTCCGGGGCCACCCGGCCCGCCAGGGCCTGCTGGACCAGCTGGACCCGAGGGAACCCCAGGACAGCCTGGACCGATTGGGCCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286-'10-12,'10-11,11-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=0.909 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(7.4=18.2)
A:
PF0139113=Collagen=FE(70.4=100),PF0139113=Collagen=PU(13.6=20.5)
C2:
PF0139113=Collagen=FE(59.4=100),PF0139113=Collagen=PU(14.7=35.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAAGTACCACCCTTGCAGC
R:
GTGGCCCAATCGGTCCAG
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]