GgaEX0005707 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12134003-12135597:+
Coord C1 exon
chr6:12134003-12134101
Coord A exon
chr6:12134729-12134782
Coord C2 exon
chr6:12135556-12135597
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGCTGTGTTGTTGTGTGCAGGGA
3' ss Score
8.62
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGTCTTGATGGCCCCACTGGAGAGAAAGGAGAACGAGGTGACCAAGGGATGCCAGGACCACCAGGATTGCCGGGTCCCATTGGACTTCCAGGATTGACA
Seq A exon
GGAGAGAAGGGTCAGCCTGGGGAGCGTGGAGACAAAGGAAATCCAGGAGAATCG
Seq C2 exon
ATGTCTGGTCCCCCTGGACCTCAAGGCCCACCAGGACCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286-'31-32,'31-31,32-32
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(29.0=60.6),PF0139113=Collagen=FE(38.1=100)
A:
PF0139113=Collagen=FE(15.5=100),PF0139113=Collagen=FE(18.6=100),PF0139113=Collagen=PU(2.4=14.3)
C2:
PF0139113=Collagen=FE(15.5=100),PF0139113=Collagen=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGATGGCCCCACTGGAGAG
R:
TCCTGGTGGGCCTTGAGG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]