MmuEX0012141 @ mm10
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61857588-61862771:-
Coord C1 exon
chr10:61862628-61862771
Coord A exon
chr10:61860440-61860484
Coord C2 exon
chr10:61857588-61857629
Length
45 bp
Sequences
Splice sites
3' ss Seq
GGATGGTTTTATTCCCACAGGGA
3' ss Score
7.74
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGGCCTCGAGGAAAACCAGGAGATATGGGGCCGGCTGGTCCTCAAGGACCCCCAGGAAAGGATGGGCCTCCAGGAATGAAGGGAGAAGTCGGACCCCCAGGAAGTCCAGGGGAGAAAGGGGAGACAGGACAAGCAGGCCCCCAG
Seq A exon
GGAGAGAAAGGAGAAGCTGGGGAGAAAGGCGACCCGGGAGCAGAG
Seq C2 exon
GTTCCTGGGCCGCCAGGGCCAGAGGGTCCTCCAGGACCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806_MULTIEX4-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(36.7=45.8),PF0139113=Collagen=PU(71.0=91.7)
A:
PF0139113=Collagen=FE(22.6=100),PF0139113=Collagen=PU(0.1=0.0)
C2:
PF0139113=Collagen=FE(16.9=100),PF0139113=Collagen=PU(18.3=92.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACCCCCAGGAAAGGATG
R:
GAGGACCCTCTGGCCCTG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types