GgaEX0006184 @ galGal3
Exon Skipping
Gene
ENSGALG00000004578 | RABGAP1L
Description
NA
Coordinates
chr8:7476737-7505278:-
Coord C1 exon
chr8:7505135-7505278
Coord A exon
chr8:7493470-7493511
Coord C2 exon
chr8:7476737-7476865
Length
42 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTCTTATTTTTCAGGGT
3' ss Score
12.86
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAGCAGTTGCCTGATTTGTATAGCCATTTCTCAGACCTCAACTTGGAAGCTCATATGTACGCATCCCAGTGGTTCCTCACCCTTTTTACTGCCAAATTTCCACTCTGCATGGTCTTCCACATCATTGATTTACTACTTTGTGAG
Seq A exon
GGTATGAACATAATCTTTCACGTAGCCCTGGCTCTCTTGAAG
Seq C2 exon
ACCTCCAAAGAGGACCTTCTACAAGCTGATTTTGAAGGAGCTTTAAAGTTCTTCAGGGTTCAGTTGCCCAAGAGGTACAGAGCTGAGGAGAACGCCAGGAGGCTGATGGAACAAGCCTGCAACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004578_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(23.0=100)
A:
PF0056613=RabGAP-TBC=FE(6.4=100)
C2:
PF0056613=RabGAP-TBC=PD(2.9=14.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCAAATTTCCACTCTGCA
R:
GCTCTGTACCTCTTGGGCAAC
Band lengths:
140-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]