MmuEX0038434 @ mm10
Exon Skipping
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:160342036-160441966:-
Coord C1 exon
chr1:160441823-160441966
Coord A exon
chr1:160392182-160392223
Coord C2 exon
chr1:160342036-160342164
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTATCTATTTTCTGTTTCAGGGT
3' ss Score
12.64
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAACAGCTGCCAGACCTGTACAGCCACTTCTGTGATCTGAACCTGGAAGCTCATATGTATGCATCCCAGTGGTTCCTCACTCTCTTTACTGCCAAGTTTCCACTCTGCATGGTGTTCCACATCATTGACCTTCTGCTGTGTGAG
Seq A exon
GGTTTGAATATAATCTTTCATGTAGCTTTGGCTCTTCTAAAG
Seq C2 exon
ACCTCAAAGGAAGACCTCCTTCAGGCTGATTTTGAAGGTGCTTTGAAGTTTTTCAGAGTTCAGCTTCCAAAGAGATACCGGGCAGAGGAGAATGCAAGAAGATTGATGGAACAGGCTTGCAATATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(38.9=93.3)
A:
PF0056613=RabGAP-TBC=FE(36.1=100)
C2:
PF0056613=RabGAP-TBC=PD(16.7=14.0)
Main Skipping Isoform:
ENSMUST00000028052fB15556
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCAAGTTTCCACTCTGCA
R:
GCCCGGTATCTCTTTGGAAGC
Band lengths:
139-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types