RnoEX0073425 @ rn6
Exon Skipping
Gene
ENSRNOG00000002736 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:RGD Symbol;Acc:1304620]
Coordinates
chr13:78089759-78196591:-
Coord C1 exon
chr13:78196448-78196591
Coord A exon
chr13:78148172-78148213
Coord C2 exon
chr13:78089759-78089887
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTCATTTATTTCTGTTGCAGGGT
3' ss Score
10
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAACAGCTGCCAGACCTGTACAGCCACTTCTGTGATCTGAACCTGGAAGCTCATATGTACGCATCCCAGTGGTTCCTCACTCTTTTTACTGCCAAGTTCCCACTCTGCATGGTGTTCCACATCATTGACCTGCTGCTGTGCGAG
Seq A exon
GGTTTGAATATAATCTTTCATGTAGCTTTGGCTCTTCTAAAG
Seq C2 exon
ACCTCAAAGGAAGACCTCCTGCAGGCTGATTTTGAAGGTGCTTTGAAGTTTTTCAGAGTTCAGCTTCCAAAGAGATACCGGGCAGAGGAGAATGCAAGAAGATTGATGGAGCAGGCTTGCAATATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002736_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(23.0=100)
A:
PF0056613=RabGAP-TBC=FE(6.4=100)
C2:
PF0056613=RabGAP-TBC=PD(2.9=14.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATCATTGACCTGCTGCT
R:
GCAAGCCTGCTCCATCAATCT
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]