GgaEX0006184 @ galGal4
Exon Skipping
Gene
ENSGALG00000004578 | RABGAP1L
Description
rab GTPase-activating protein 1-like [Source:RefSeq peptide;Acc:NP_001012941]
Coordinates
chr8:7142898-7171161:-
Coord C1 exon
chr8:7171018-7171161
Coord A exon
chr8:7159353-7159394
Coord C2 exon
chr8:7142898-7143026
Length
42 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTCTTATTTTTCAGGGT
3' ss Score
12.86
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAGCAGTTGCCTGATTTGTATAGCCATTTCTCAGACCTCAACTTGGAAGCTCATATGTACGCATCCCAGTGGTTCCTCACCCTTTTTACTGCCAAATTTCCACTCTGCATGGTCTTCCACATCATTGATTTACTACTTTGTGAG
Seq A exon
GGTATGAACATAATCTTTCACGTAGCCCTGGCTCTCTTGAAG
Seq C2 exon
ACCTCCAAAGAGGACCTTCTACAAGCTGATTTTGAAGGAGCTTTAAAGTTCTTCAGGGTTCAGTTGCCCAAGAGGTACAGAGCTGAGGAGAACGCCAGGAGGCTGATGGAACAAGCCTGCAACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004578_MULTIEX1-5/8=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(23.0=100)
A:
PF0056613=RabGAP-TBC=FE(6.4=100)
C2:
PF0056613=RabGAP-TBC=PD(2.9=14.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCAAATTTCCACTCTGCA
R:
GCTCTGTACCTCTTGGGCAAC
Band lengths:
140-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]