GgaEX0007060 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:367954-372231:+
Coord C1 exon
chr8_random:367954-368075
Coord A exon
chr8_random:369653-369890
Coord C2 exon
chr8_random:372169-372231
Length
238 bp
Sequences
Splice sites
3' ss Seq
GCTGATGTTGGCTGTTTCAGGAT
3' ss Score
7.52
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GAGAGGTTCTGCGAATGACTCACATTGCCCGGGGGTTGGATTCTGATGGAGCCTTACTGCTGGATGTTGTTGTGAATGGCCATGTTCTTCAGCTGCAGCCACTAGCTAATGTTAACATGAAG
Seq A exon
GATTACACAGAAGACTACATTCAGACCGGCCCCGGGCAGCTGTATGCCTATTCCACTCGCCTCTTTGCTGTGGATGGAGTTAGTGTTCCCTACATGTGGAACCACACTATTACCTATGATCACACTAAAGGAAAAATGCCTTTTTTGGTGGAAACACTCCATGCTTCCTCTATCACAACAGAGTACAACCCCCTGGAAGAAACTTTGGCTTTTAAAATCCACGCTTCCATTTCAAAAG
Seq C2 exon
GAGATCGTAACAACCAGTGTCCTGCTGGGTTTGAGTTGAACTCATCTGGGCCTTACTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'111-132,'111-131,112-132
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=FE(21.3=100)
A:
PF074747=G2F=PD(26.1=61.2)
C2:
PF126622=cEGF=PU(80.0=72.7),PF146701=FXa_inhibition=PU(4.9=9.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCTGCGAATGACTCACA
R:
TGTACAGTAAGGCCCAGATGAGT
Band lengths:
181-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]