RnoEX6044658 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67928795-67933763:-
Coord C1 exon
chr13:67933642-67933763
Coord A exon
chr13:67932712-67932949
Coord C2 exon
chr13:67928795-67928857
Length
238 bp
Sequences
Splice sites
3' ss Seq
CCTCAAATCCTTTTCCTTAGGAT
3' ss Score
8.25
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GAGAGGTCTTGAGGATGACACATGTGGCTCGGGGCTTAGATTCCGACGGCGCATTGCTGCTTGACGTCATTGTGAGTGGCCATGTCCTGCAGCTCCACTCACCTGCTGAAGTTAGTGTGAAG
Seq A exon
GATTACACAGAGGACTACATTCAAACAGGACCTGGGCAGCTCTACGCCTACTCAACCCGGCTGTTCACCATCGATGGCATCAGTGTCCCCTATACATGGAACCACACCATTTTCTATGATCAGGCCTGGGGGAAAATGCCTTTCTTAGTAGAAACACTTCATGCATCTTCTGTAGAATCTGACTACAACCAACTAGAGGAGACACTGGGTTTCAAAATCCACGCTTCAATCTCCAAAG
Seq C2 exon
GAGATCGCAGTAACCAGTGCCCCTCTGGTTTTATCTTAGACTCAGCTGGACCCTTCTGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'115-115,'115-113,116-115=AN
Average complexity
A_S
Mappability confidence:
89%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=FE(21.3=100)
A:
PF074747=G2F=PD(26.1=61.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGTCTTGAGGATGACACA
R:
CAGAAGGGTCCAGCTGAGTCT
Band lengths:
180-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]