GgaEX0007091 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:334218-339735:+
Coord C1 exon
chr8_random:334218-334367
Coord A exon
chr8_random:338850-339009
Coord C2 exon
chr8_random:339611-339735
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCTCCATCCTACATTCCTAGTTC
3' ss Score
6.52
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AGAACTCCAATTCTCTAGACGTTCATATTTTTTCTGGTGGAAGCAGGCTTCAGATTGCTCACTCTCAGCTTCTAGACAGTGGGACCTACACATGTATTGCCTCAAATGTAGAGGGAAAAGCTCAGAAAAGATTTGTGCTTTCCGTTCAAG
Seq A exon
TTCCTCCTAGTATTGTTGGCTCTGAAATGCCTAGAGAGGTCGGTGTCCTCTTGGGAGAAGGCATCCAGCTAGTATGCAATGCCACTGGAGTGCCAATGCCTGTTGTACAATGGCTTAAAGATGGAAAAACAGTTGCCAGTGACAACTTAGAAAGAATAAG
Seq C2 exon
AGTAGCTCCAGATGGCAGCACATTAAACATCTTCAGAGCTCTCACTTCTGATACAGGAAAATACACTTGTGTGGCGACTAATCCTGCAGGAGAAGAGGACCAGATTTTCAACTTGAGTGTATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'74-91,'74-90,75-91
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.023
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(52.7=94.1)
A:
PF0767911=I-set=PU(53.9=88.9)
C2:
PF0767911=I-set=PD(44.9=93.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTCTGGTGGAAGCAGGCT
R:
ACACTCAAGTTGAAAATCTGGTCCT
Band lengths:
242-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]