RnoEX6044636 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68000847-68005559:-
Coord C1 exon
chr13:68005410-68005559
Coord A exon
chr13:68003261-68003420
Coord C2 exon
chr13:68000847-68000971
Length
160 bp
Sequences
Splice sites
3' ss Seq
AAAGTCTTATTTCTCTAAAGTCC
3' ss Score
3.54
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AAAACTCTGACCCCCTTGAGGCTCACATTTTGTCTGGAGGAAGCAAACTGCAAATTGCCCGACTTCAGCGTTCAAACCGTGGAAACTACACGTGTGTTGCATCCAATATGGAGGGAAAGGCTCAGAAAAATTATATCCTTTCCATTCAGG
Seq A exon
TCCCTCCAAGTGTTGCCGGTGCGGAAGTTCCAAGTGAAGTTAGTGTCCTTCTTGGGGAAAATGTGGAGCTGGTCTGTGATGCAGATGGCATTCCCATCCCTCGTCTACAGTGGCTTAGAGACGGAAAACCCATAGTGAGTGGTGAAACAGAACGAGTCAG
Seq C2 exon
GGTCACCACAGATGGCAGCACACTAAATATTTACAGAGCCCTCACATCTGACATGGGAAAGTATACATGTGTGGCTACTAATCCTGCTGGAGAAGAAGACCGAATATTTAACTTGAATGTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'76-77,'76-76,77-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.093 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(52.7=94.1)
A:
PF0767911=I-set=PU(52.9=85.2)
C2:
PF0767911=I-set=PD(46.0=93.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTTGAGGCTCACATTTT
R:
CGGTCTTCTTCTCCAGCAGGA
Band lengths:
242-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]