GgaEX0007096 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:351253-352064:+
Coord C1 exon
chr8_random:351253-351409
Coord A exon
chr8_random:351588-351709
Coord C2 exon
chr8_random:351900-352064
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTTTCTTTGTTCAGACT
3' ss Score
8.79
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
TTCCTCCAACTATTGCTTCTGGACATACTAATATTACAGTTACCGTAAACATGCAGACCACTTTGCCTTGTGAAGCCACTGGAATTCCCAGGCCAGCAGTTAGCTGGAAAAAGAATGGGCATCTGCTTAGTCTTGACCAGAATCAGAATACTTACAG
Seq A exon
ACTTCTGTCTTCAGGTTCCTTAGTAATCATTTCTCCCACTGTGGATGACACTGCTGTCTATGAGTGCTCTGTGTCAAATGATGCAGGAGAAGATCAAAGAGCAGTTGAGCTCACTGTTCAAG
Seq C2 exon
TACCCCCATCTATAGCAGATGAAGCCACAGATCTCTTGGTAACAAAGCTATCTCCAGTAGTAATTTCCTGCACTGCCTCAGGAGTTCCTGTTCCTTCAGTTCATTGGACTAAAAATGGCGTGAAGTTGCTTCCCAGAGGAGATGGCTACAGAATTCTCCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'87-105,'87-104,88-105
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.262 C2=0.018
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(55.6=94.3)
A:
PF0767911=I-set=PD(43.3=92.9)
C2:
PF0767911=I-set=PU(60.2=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGACCACTTTGCCTTGT
R:
TAGCCATCTCCTCTGGGAAGC
Band lengths:
255-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]