RnoEX6044646 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67973283-67976343:-
Coord C1 exon
chr13:67976187-67976343
Coord A exon
chr13:67973634-67973755
Coord C2 exon
chr13:67973283-67973447
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGGACTCTCCTCTAGACT
3' ss Score
7.62
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TTCCTCCCTCCATTGCTGCGGGTCCTACCAATGTAACAGTGACCGTGAACGTCCAAACTACTTTGGCTTGTGAAGCTACTGGGATACCAAAGCCATCAATCAACTGGAGAAAAGACGGACATCTGCTTAATGTAGATCAAAATCAGAATTCATACAG
Seq A exon
ACTCCTTTCCTCAGGTTCACTCATCATCATTTCCCCCTCTGTGGATGACACTGCCAGTTACGAGTGCACCGTGACAAGTGATGCTGGAGAGGACAAGAGAACAGTGGACCTCACTGTCCAAG
Seq C2 exon
TTCCTCCCACCATAGCTGATGAGCCTATGGATTTCCTGGTAACCAGACAGGCCCCAGCAGTCATGACCTGCTCTGCTTCTGGAGTTCCACTTCCCTCAATTCACTGGACCAAAAATGGCATAAGACTGCTTCCCAGGGGAGATGGCTATCGGATTCTGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'89-89,'89-88,90-89=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.357 C2=0.018
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(55.6=94.3)
A:
PF0767911=I-set=PD(43.3=92.9)
C2:
PF0767911=I-set=PU(60.2=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCGTGAACGTCCAAACT
R:
CCCTGGGAAGCAGTCTTATGC
Band lengths:
257-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]