GgaEX0007172 @ galGal4
Exon Skipping
Gene
ENSGALG00000005206 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:3570]
Coordinates
chr9:7569833-7576261:+
Coord C1 exon
chr9:7569833-7570010
Coord A exon
chr9:7574317-7574426
Coord C2 exon
chr9:7576123-7576261
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTTTTTGTTTCAGTTG
3' ss Score
10.93
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTCATCCTTGGCAAGTACACCTGGCTTTCGTATGAAGATGTATACATCAAAGCTGTTAATTTTGGAAATGGGTTAGCAGTGTTGGGTCAGCAACCAAAGACAAACATTGCTATCTTCTGTGAGACTAGAGCTGAGTGGATGATTGCAGCACAAGCCTGCTTCATGTGCAACTACCAGC
Seq A exon
TTGTTACTCTGTATGCTACCCTAGGAGGTGCAGCAATAGTACATGGGCTAAACGAAACAGAGGTGACCACCATCATTACTAGTAAAGAACTGATGCAAACAAAACTAAAG
Seq C2 exon
GAAATTGTTTCTCAAATTCCACGGCTGCGACATATTATTACAGTGGATGGCAAACCAACAACATGGTCAGAATTTCCCAAGGGTGTCATTGTTCACACTATGGCTTCTGTGCAAGCTATGGGAGCCAAGGCAGATAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005206_MULTIEX1-2/4=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.4=100)
A:
PF0050123=AMP-binding=FE(7.5=100)
C2:
PF0050123=AMP-binding=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTAGCAGTGTTGGGTCAG
R:
ACTATCTGCCTTGGCTCCCAT
Band lengths:
247-357
Functional annotations
There are 1 annotated functions for this event
PMID: 20429931
[Inferred from paralogous MUTEX event in ASCL6]. Isoforms with different fatty acid Gate-domain motifs (by inclusion of mutually exclusive exons) have different activity and the form lacking this domain, isoform 3 (including no exon), showed no detectable activity.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]